Research workbench
Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and insti XZ419 (compound 4C)
Analyse Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V3K
- Type
- protein + DNA
- Length
- 649 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P39476, Q76353
- Ligands
- QUW, MG, ZN
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 259 | — | P39476, Q76353 |
| B | — | protein | 242 | — | P39476, Q76353 |
| C | — | protein | 65 | — | P39476, Q76353 |
| D | — | protein | 47 | — | P39476, Q76353 |
| E | — | dna | 19 | — | — |
| F | — | dna | 17 | — | — |
Ligands and binding sites
- QUW · 4-azanyl-N-[[2,4-bis(fluoranyl)phenyl]methyl]-1-oxidanyl-2-oxidanylidene-6-(5-oxidanylpentyl)-1,8-naphthyridine-3-carboxamide · ligand · chains A, D, E, F
- MG · Magnesium ion · metal · 2 copies · chains A, F
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6V3K · Structure of HIV cleaved synaptic complex (CSC) intasome bound with magnesium and INSTI… · the same entry in another collection · chain F against F, TM-score 1.00
- P39476 · AlphaFold monomer V2.0 prediction for DNA-binding protein 7D (P39476) · a predicted model of the same protein · chain D against A, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39476
- Every structure of UniProt Q76353
- Elsewhere: RCSB PDB 6V3K · PDBe 6V3K · UniProt P39476 · UniProt Q76353
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