MolNFT v1 · #166842 · protein
Crystal structure of CDYL2 in complex with H3TK27ME3
6V2H: “Crystal structure of CDYL2 in complex with H3TK27ME3”. X-ray diffraction, 3 ligands (ACE, NI, UNX). MolNFT v1 #166842 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6V2H
- Type
- protein
- Length
- 408 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8N8U2
- Ligands
- ACE, NI, UNX
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 57 | — | Q8N8U2 |
| B, D, F, J, L | — | protein | 9 | — | — |
| C, E | — | protein | 60 | — | Q8N8U2 |
| G, I | — | protein | 59 | — | Q8N8U2 |
| H | — | protein | 10 | — | — |
| K | — | protein | 58 | — | Q8N8U2 |
Ligands and binding sites
- ACE · Acetyl group · ligand · 6 copies · chains A, B, E, F, D, G, H, I, J, L
- NI · Nickel (II) ion · metal · 6 copies · chains A, C, E, G, I, K
- UNX · Unknown atom or ion · ion · 29 copies · chains A, I, B, F, C, E, G, H, J, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6V2H · Crystal structure of CDYL2 in complex with H3tK27me3 · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N8U2
- Elsewhere: RCSB PDB 6V2H · PDBe 6V2H · UniProt Q8N8U2
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