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MolNFT v1 · #166755 · protein

The structure of a red shifted photosystem I complex

6UZV: “The structure of a red shifted photosystem I complex”. Electron microscopy, 8 ligands (CLA, BCR, LHG). MolNFT v1 #166755 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6UZV
Type
protein
Length
6,711 residues
Chains
33
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P29254, P32422, P19569, P12975, P29256, Q55330, Q55329, P37277, P72986, P74564
Ligands
CLA, BCR, LHG, LMG, SF4, PQN, CL0, CA

Structure

electron microscopy · 11 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, a, 1—protein739—P29254
B, b, 2—protein733——
C, c, 3—protein80—P32422
D, d, 4—protein138—P19569
E, e, 5—protein68—P12975
F, f, 6—protein141—P29256
I, i, h—protein37—Q55330
J, j, 7—protein39—Q55329
L, l, 0—protein153—P37277
M, m, 9—protein30—P72986
K, k, 8—protein79—P74564

Ligands and binding sites

  • CLA · Chlorophyll A · ligand · 288 copies · chains A, B, F, J, K, L, 0, b, m, M, I, 8, i, l, a, f, j, k, 2, 9, 1, 7, 6, h
  • BCR · Beta-carotene · ligand · 69 copies · chains A, B, F, J, I, L, l, M, K, a, b, 1, 2, f, j, m, 6, 7, i, h, 0, k, 8, 9
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 12 copies · chains A, E, B, I, M, 0, a, e, 1, 5, b, 2, L, i, m, h, l, 9
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 12 copies · chains A, L, B, i, a, l, 9, 1, b, 2, h, I, 0
  • SF4 · Iron/sulfur cluster · ligand · 9 copies · chains A, B, C, a, b, 1, 2, c, 3
  • PQN · Phylloquinone · ligand · 6 copies · chains A, B, a, 1, b, 2
  • CL0 · Chlorophyll A isomer · ligand · 3 copies · chains A, B, a, b, 1, 2
  • CA · Calcium ion · metal · 3 copies · chains L, 0, a, l, 1
  • LMT · Dodecyl-beta-D-maltoside · additive · 6 copies · chains A, F, I, 0, a, f, 1, 6, L, i, h, l

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6UZV · The structure of a red shifted photosystem I complex · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

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