MolNFT v1 · #166253 · protein
Co-complex of S. pyogenes 10782 streptopain bound with a nitrile-based specific covalent inhibitor
6UKD: “Co-complex of S. pyogenes 10782 streptopain bound with a nitrile-based specific covalent inhibitor”. X-ray diffraction, 2 ligands (Q9D, NO3). MolNFT v1 #166253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UKD
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0C0J0
- Ligands
- Q9D, NO3
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 257 | — | P0C0J0 |
Ligands and binding sites
- Q9D · benzyl [(2S)-1-(3-nitrophenyl)-3-oxobutan-2-yl]carbamate · ligand · chains A
- NO3 · Nitrate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UKD · Co-complex of S. pyogenes 10782 streptopain bound with a nitrile-based specific covalent… · the same entry in another collection · chain A against A, TM-score 1.00
- P0C0J0 · AlphaFold monomer V2.0 prediction for streptopain (P0C0J0) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C0J0
- Elsewhere: RCSB PDB 6UKD · PDBe 6UKD · UniProt P0C0J0
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