MolNFT v1 · #434298 · protein
AlphaFold monomer V2.0 prediction for streptopain (P0C0J0)
P0C0J0: “AlphaFold monomer V2.0 prediction for streptopain (P0C0J0)”. 4 pockets (best druggability 0.45). MolNFT v1 #434298 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P0C0J0
- Type
- protein
- Length
- 398 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Streptopain
- UniProt
- P0C0J0
- Pockets
- 4 · best druggability 0.45
Structure
1 distinct chain · 29% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Streptopain | protein | 398 | 29% helix, 17% strand | P0C0J0 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.45 | 0.75 | 26 | empty |
| 2 | 114 | 0.43 | 0.78 | 34 | empty |
| 3 | 63 | 0.36 | 0.78 | 13 | empty |
| 4 | 58 | 0.25 | 0.73 | 18 | empty |
Compared structures
- 1DKI · Crystal structure of the zymogen form of streptococcal pyrogenic exotoxin B active site… · an experimental structure of the same protein · chain A against C, TM-score 0.84
- 1DKI · Crystal structure of the zymogen form of streptococcal pyrogenic exotoxin B active site… · an experimental structure of the same protein · chain A against C, TM-score 0.84
- 1PVJ · Crystal structure of the streptococcal pyrogenic exotoxin B (speb)- inhibitor complex · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 1PVJ · Crystal structure of the Streptococcal pyrogenic exotoxin B (SpeB)- inhibitor complex · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 6UQD · Co-complex of S. pyogenes 10782 streptopain bound with a sufex-based optimized small… · an experimental structure of the same protein · chain A against B, TM-score 0.59
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C0J0
- Elsewhere: UniProt P0C0J0 · AlphaFold DB P0C0J0
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