MolNFT v1 · #166147 · protein + DNA
Structural basis of compass ecm recognition of the H2BUB nucleosome
6UH5: “Structural basis of compass ecm recognition of the H2BUB nucleosome”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #166147 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UH5
- Type
- protein + DNA
- Length
- 2,613 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q92133, P62799, Q6AZJ8, A0A1L8FQ56, Q6CLY5, Q6CIT4, Q6CXF3, J3QS39, Q6CRQ4, Q6CTQ1, Q6CPN6
- Ligands
- ZN
Structure
electron microscopy · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 98 | — | Q92133 |
| B | — | protein | 82 | — | P62799 |
| C, G | — | protein | 107 | — | Q6AZJ8 |
| D | — | protein | 93 | — | A0A1L8FQ56 |
| E | — | protein | 95 | — | Q92133 |
| F | — | protein | 86 | — | P62799 |
| H | — | protein | 93 | — | A0A1L8FQ56 |
| I | — | dna | 146 | — | — |
| J | — | dna | 146 | — | — |
| K | — | protein | 305 | — | Q6CLY5 |
| M | — | protein | 222 | — | Q6CIT4 |
| N | — | protein | 408 | — | Q6CXF3 |
| Q | — | protein | 76 | — | J3QS39 |
| R | — | protein | 9 | — | — |
| X | — | protein | 73 | — | Q6CRQ4 |
| L | — | protein | 382 | — | Q6CTQ1 |
| O | — | protein | 42 | — | Q6CPN6 |
| P | — | protein | 43 | — | Q6CPN6 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UH5 · Structural basis of COMPASS eCM recognition of the H2Bub nucleosome · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92133
- Every structure of UniProt P62799
- Every structure of UniProt Q6AZJ8
- Every structure of UniProt A0A1L8FQ56
- Every structure of UniProt Q6CLY5
- Every structure of UniProt Q6CIT4
- Every structure of UniProt Q6CXF3
- Every structure of UniProt J3QS39
- Every structure of UniProt Q6CRQ4
- Every structure of UniProt Q6CTQ1
- Every structure of UniProt Q6CPN6
- Elsewhere: RCSB PDB 6UH5 · PDBe 6UH5 · UniProt Q92133 · UniProt P62799 · UniProt Q6AZJ8 · UniProt A0A1L8FQ56 · UniProt Q6CLY5 · UniProt Q6CIT4 · UniProt Q6CXF3 · UniProt J3QS39 · UniProt Q6CRQ4 · UniProt Q6CTQ1 · UniProt Q6CPN6
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