MolNFT v1 · #165958 · protein

Fluorogen activating protein DIB1

6UBO: “Fluorogen activating protein DIB1”. X-ray diffraction, 2 ligands (Q3J, P4K). MolNFT v1 #165958 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6UBO
Type: protein
Length: 318 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0A901
Ligands: Q3J, P4K

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	159	—	P0A901

Ligands and binding sites

Q3J · 12-(diethylamino)-2,2-bis(fluoranyl)-4,5-dimethyl-5-aza-3-azonia-2-boranuidatricyclo[7.4.0.0^{3, 7}]trideca-1(13),3,7,9,11-pentaen-6-one · ligand · 2 copies · chains A, B
P4K · polyethylene glycol · ligand · 2 copies · chains A, B
CIT · Citric acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6UBO · Fluorogen Activating Protein Dib1 · the same entry in another collection · chain A against A, TM-score 1.00
P0A901 · AlphaFold monomer V2.0 prediction for outer membrane lipoprotein blc (P0A901) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A901
Elsewhere: RCSB PDB 6UBO · PDBe 6UBO · UniProt P0A901

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