MolNFT v1 · #165745 · protein
HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B
6U59: “HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #165745 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6U59
- Type
- protein
- Length
- 2,412 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3UES2, B3UEZ6
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, G | — | protein | 454 | — | B3UES2 |
| B, D, I | — | protein | 120 | — | B3UEZ6 |
| L, E, J | — | protein | 112 | — | — |
| H, F, K | — | protein | 118 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 108 copies · chains A, H, C, F, G, K, B, D, I
- BMA · beta-D-mannopyranose · sugar · 6 copies
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A, C, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6U59 · HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3UES2
- Every structure of UniProt B3UEZ6
- Elsewhere: RCSB PDB 6U59 · PDBe 6U59 · UniProt B3UES2 · UniProt B3UEZ6
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