MolNFT v1 · #165710 · protein

1.7 ångström structure of a pathogenic human syt 1 C2B (D304G)

6U41 · Synaptotagmin-1: “1.7 ångström structure of a pathogenic human syt 1 C2B (D304G)”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #165710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6U41
Type: protein
Length: 148 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Synaptotagmin-1
UniProt: P21579
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Synaptotagmin-1	protein	148	16% helix, 46% strand	P21579

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6U41 · 1.7 angstrom structure of a pathogenic human Syt 1 C2B (D304G) · the same entry in another collection · chain A against A, TM-score 1.00
P21579 · AlphaFold monomer V2.0 prediction for synaptotagmin-1 (P21579) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21579
Elsewhere: RCSB PDB 6U41 · PDBe 6U41 · UniProt P21579

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