MolNFT v1 · #165603 · protein
Asymmetrically open conformational state (class I) of HIV-1 env trimer BG505 SOSIP.664 in complex with SCD4 and E51 Fab
6U0L: “Asymmetrically open conformational state (class I) of HIV-1 env trimer BG505 SOSIP.664 in complex with SCD4…”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #165603 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6U0L
- Type
- protein
- Length
- 2,501 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6, P01730
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 365 | — | Q2N0S6 |
| B | — | protein | 367 | — | Q2N0S6 |
| C | — | protein | 365 | — | Q2N0S6 |
| D, E, F | — | protein | 97 | — | P01730 |
| H, I, P | — | protein | 132 | — | — |
| J, L, Q | — | protein | 110 | — | — |
| X | — | protein | 133 | — | Q2N0S6 |
| Y | — | protein | 133 | — | Q2N0S6 |
| Z | — | protein | 121 | — | Q2N0S6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 35 copies · chains A, H, B, I, C, P, Z, X
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A, B, C
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6U0L · Asymmetrically open conformational state (Class I) of HIV-1 Env trimer BG505 SOSIP.664 in… · the same entry in another collection · chain Z against Z, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Every structure of UniProt P01730
- Elsewhere: RCSB PDB 6U0L · PDBe 6U0L · UniProt Q2N0S6 · UniProt P01730
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