MolNFT v1 · #165308 · protein
The crystal structure of the msp domain of human MOSPD2 in complex with the conventional ffat motif of ORP1.
6TQS: “The crystal structure of the msp domain of human MOSPD2 in complex with the conventional ffat motif of ORP1.”. X-ray diffraction, 2 ligands (SO4, CL). MolNFT v1 #165308 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TQS
- Type
- protein
- Length
- 821 residues
- Chains
- 11
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8NHP6, Q9BXW6
- Ligands
- SO4, CL
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 131 | — | Q8NHP6 |
| B | — | protein | 132 | — | Q8NHP6 |
| C | — | protein | 132 | — | Q8NHP6 |
| D | — | protein | 129 | — | Q8NHP6 |
| E | — | protein | 129 | — | Q8NHP6 |
| F | — | protein | 130 | — | Q8NHP6 |
| G, I, J | — | protein | 8 | — | Q9BXW6 |
| H, K | — | protein | 7 | — | Q9BXW6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A, C, E, F
- CL · Chloride ion · ion · chains A
- TFA · trifluoroacetic acid · additive · 6 copies · chains A, D, B, E, C, F
- GOL · Glycerol · additive · 5 copies · chains A, D, F, B, E, C
- PEG · Di(hydroxyethyl)ether · additive · chains C, F
- 1PE · Pentaethylene glycol · additive · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TQS · The crystal structure of the MSP domain of human MOSPD2 in complex with the conventional… · the same entry in another collection · chain K against K, TM-score 1.00
- Q8NHP6 · AlphaFold monomer V2.0 prediction for motile sperm domain-containing protein 2 (Q8NHP6) · a predicted model of the same protein · chain E against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NHP6
- Every structure of UniProt Q9BXW6
- Elsewhere: RCSB PDB 6TQS · PDBe 6TQS · UniProt Q8NHP6 · UniProt Q9BXW6
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