MolNFT v1 · #165209 · protein
Crystal structure of the vwf domain of the type V pili tip protein MFA5 from porphyromonas gingivalis
6TNJ · Minor fimbrium subunit MFA5: “Crystal structure of the vwf domain of the type V pili tip protein MFA5 from porphyromonas gingivalis”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.36). MolNFT v1 #165209 on…
- PDB
- 6TNJ
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Minor fimbrium subunit MFA5
- UniProt
- B2RHG5
- Ligands
- CA
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Minor fimbrium subunit MFA5 | protein | 296 | 37% helix, 21% strand | B2RHG5 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
- MPO · 3[N-morpholino]propane sulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.36 | 0.72 | 28 | CA |
Compared structures
- 6TNJ · Crystal structure of the vWF domain of the type V pili tip protein Mfa5 from… · the same entry in another collection · chain A against A, TM-score 1.00
- B2RHG5 · AlphaFold monomer V2.0 prediction for minor fimbrium subunit MFA5 (B2RHG5) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2RHG5
- Elsewhere: RCSB PDB 6TNJ · PDBe 6TNJ · UniProt B2RHG5
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