MolNFT v1 · #164627 · protein
Pas-gaf fragment from deinococcus radiodurans phytochrome 1PS after photoexcitation
6T3U: “Pas-gaf fragment from deinococcus radiodurans phytochrome 1PS after photoexcitation”. X-ray diffraction, 1 ligand (LBV). MolNFT v1 #164627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6T3U
- Type
- protein
- Length
- 628 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9RZA4
- Ligands
- LBV
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 315 | — | Q9RZA4 |
| A | — | protein | 313 | — | Q9RZA4 |
Ligands and binding sites
- LBV · 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid · ligand · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6T3U · PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation · the same entry in another collection · chain B against B, TM-score 1.00
- Q9RZA4 · AlphaFold monomer V2.0 prediction for bacteriophytochrome (Q9RZA4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RZA4
- Elsewhere: RCSB PDB 6T3U · PDBe 6T3U · UniProt Q9RZA4
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