MolNFT v1 · #164273 · protein

Structure of the pentameric ligand-gated ion channel elic in complex with a nam nanobody

6SSP: “Structure of the pentameric ligand-gated ion channel elic in complex with a nam nanobody”. X-ray diffraction, 2 ligands (UMQ, CA). MolNFT v1 #164273 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6SSP
Type: protein
Length: 3,260 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0C7B7
Ligands: UMQ, CA

Structure

x-ray diffraction · 12 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	299	—	P0C7B7
B	—	protein	304	—	P0C7B7
C	—	protein	304	—	P0C7B7
D	—	protein	299	—	P0C7B7
E	—	protein	303	—	P0C7B7
F	—	protein	296	—	P0C7B7
G	—	protein	303	—	P0C7B7
H	—	protein	302	—	P0C7B7
I	—	protein	300	—	P0C7B7
J	—	protein	297	—	P0C7B7
K	—	protein	129	—	—
L	—	protein	124	—	—

Ligands and binding sites

UMQ · Undecyl-maltoside · ligand · 10 copies · chains A, E, B, C, D, F, J, G, H, I
CA · Calcium ion · metal · 8 copies · chains A, E, B, C, D, F, J, G, H, I

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6SSP · Structure of the pentameric ligand-gated ion channel ELIC in complex with a NAM nanobody · the same entry in another collection · chain L against L, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0C7B7
Elsewhere: RCSB PDB 6SSP · PDBe 6SSP · UniProt P0C7B7

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