MolNFT v1 · #164152 · protein
Fragments KCL_615 and KCL_802 in complex with MAP kinase P38-alpha
6SOV · Mitogen-activated protein kinase 14: “Fragments KCL_615 and KCL_802 in complex with MAP kinase P38-alpha”. X-ray diffraction, 5 ligands (SB4, LOT, LOW), 2 pockets (best druggability 0.66). MolNFT v1 #164152 on GenesisL1: 3D…
- PDB
- 6SOV
- Type
- protein
- Length
- 345 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitogen-activated protein kinase 14
- EC
- 2.7.11.24
- UniProt
- P47811
- Ligands
- SB4, LOT, LOW, CA, SO4
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitogen-activated protein kinase 14 (EC 2.7.11.24) | protein | 345 | 39% helix, 16% strand | P47811 |
Ligands and binding sites
- SB4 · 4-(4-fluorophenyl)-1-(4-piperidinyl)-5-(2-amino-4-pyrimidinyl)-imidazole · ligand · chains A
- LOT · 6-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]pyridine-3-sulfonamide · ligand · chains A
- LOW · (5~{S},7~{R})-3-azanyladamantan-1-ol · ligand · chains A
- CA · Calcium ion · metal · 4 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 298 | 0.66 | 0.81 | 40 | SB4 |
| 2 | 311 | 0.57 | 0.77 | 45 | empty |
Compared structures
- 6SOV · Fragments KCL_615 and KCL_802 in complex with MAP kinase p38-alpha · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P47811
- Elsewhere: RCSB PDB 6SOV · PDBe 6SOV · UniProt P47811
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