MolNFT v1 · #164033 · protein
The unique cbm-CTHE_0271 of ruminiclostridium thermocellum
6SL4 · Type 3A cellulose-binding domain protein: “The unique cbm-CTHE_0271 of ruminiclostridium thermocellum”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.37). MolNFT v1 #164033 on GenesisL1: 3D structure, binding…
- PDB
- 6SL4
- Type
- protein
- Length
- 449 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type 3A cellulose-binding domain protein
- UniProt
- A3DC31
- Ligands
- CA
- Pockets
- 3 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Type 3A cellulose-binding domain protein | protein | 150 | 6% helix, 53% strand | A3DC31 |
| C | Type 3A cellulose-binding domain protein | protein | 149 | 6% helix, 53% strand | A3DC31 |
Ligands and binding sites
- CA · Calcium ion · metal · 5 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.37 | 0.76 | 16 | empty |
| 2 | 99 | 0.33 | 0.73 | 20 | empty |
| 3 | 84 | 0.33 | 0.74 | 13 | empty |
Interfaces
2 interfaces between chains.
- A–B · 655 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 123 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6SL4 · The unique CBM-Cthe_0271 of Ruminiclostridium thermocellum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3DC31
- Elsewhere: RCSB PDB 6SL4 · PDBe 6SL4 · UniProt A3DC31
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