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The unique cbm-CTHE_0271 of ruminiclostridium thermocellum

Analyse The unique cbm-CTHE_0271 of ruminiclostridium thermocellum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6SL4
Type: protein
Length: 449 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type 3A cellulose-binding domain protein
UniProt: A3DC31
Ligands: CA
Pockets: 3 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Type 3A cellulose-binding domain protein	protein	150	6% helix, 53% strand	A3DC31
C	Type 3A cellulose-binding domain protein	protein	149	6% helix, 53% strand	A3DC31

Ligands and binding sites

CA · Calcium ion · metal · 5 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.37	0.76	16	empty
2	99	0.33	0.73	20	empty
3	84	0.33	0.74	13	empty

Interfaces

2 interfaces between chains.

A–B · 655 Å² buried · 10 hydrogen bonds · protein-protein
B–C · 123 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6SL4 · The unique CBM-Cthe_0271 of Ruminiclostridium thermocellum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3DC31
Elsewhere: RCSB PDB 6SL4 · PDBe 6SL4 · UniProt A3DC31

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