MolNFT v1 · #163327 · protein

Multicrystal structure of proteinase K at room temperature using a multilayer monochromator.

6RZP: “Multicrystal structure of proteinase K at room temperature using a multilayer monochromator.”. X-ray diffraction, 4 ligands (CA, NA, SO4), 1 pocket (best druggability 0.34). MolNFT v1 #163327 on GenesisL1: 3D structure, binding…

PDB: 6RZP
Type: protein
Length: 279 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proteinase K
EC: 3.4.21.64
UniProt: P06873
Ligands: CA, NA, SO4, CL
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proteinase K (EC 3.4.21.64)	protein	279	27% helix, 24% strand	P06873

Ligands and binding sites

CA · Calcium ion · metal · chains A
NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.34	0.75	25	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6RZP · Multicrystal structure of Proteinase K at room temperature using a multilayer… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06873
Elsewhere: RCSB PDB 6RZP · PDBe 6RZP · UniProt P06873

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