MolNFT v1 · #163151 · protein
Crystal structure of casein kinase I delta (CK1D) in complex with monophosphorylated P63 PAD1P peptide
6RU6: “Crystal structure of casein kinase I delta (CK1D) in complex with monophosphorylated P63 PAD1P peptide”. X-ray diffraction, 3 ligands (ACP, NA, SO4). MolNFT v1 #163151 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RU6
- Type
- protein
- Length
- 574 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P48730, Q9H3D4
- Ligands
- ACP, NA, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 288 | — | P48730 |
| B | — | protein | 278 | — | P48730 |
| C | — | protein | 8 | — | Q9H3D4 |
Ligands and binding sites
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · chains B
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RU6 · Crystal structure of Casein Kinase I delta (CK1d) in complex with monophosphorylated p63… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H3D4 · AlphaFold monomer V2.0 prediction for tumor protein 63 (Q9H3D4) · a predicted model of the same protein · chain C against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48730
- Every structure of UniProt Q9H3D4
- Elsewhere: RCSB PDB 6RU6 · PDBe 6RU6 · UniProt P48730 · UniProt Q9H3D4
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