MolNFT v1 · #162995 · protein
Structure of metallo beta lactamase vim-2 with cyclic boronate APC308.
6RPN: “Structure of metallo beta lactamase vim-2 with cyclic boronate APC308.”. X-ray diffraction, 5 ligands (KDZ, KL8, ZN). MolNFT v1 #162995 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RPN
- Type
- protein
- Length
- 464 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9K2N0
- Ligands
- KDZ, KL8, ZN, MG, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 232 | — | Q9K2N0 |
Ligands and binding sites
- KDZ · (3~{R})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid · ligand · 2 copies · chains A, B
- KL8 · (3~{S})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 6 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains B
- CL · Chloride ion · ion · 4 copies · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K2N0
- Elsewhere: RCSB PDB 6RPN · PDBe 6RPN · UniProt Q9K2N0
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