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Ligand · KDZ

KDZ · (3~{R})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid

KDZ, (3~{R})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid (C16 H16 B O5 S -1, 331.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site…

Component
KDZ
Formula
C16 H16 B O5 S -1
Class
ligand
Structures
1
PDB entries
1

Binding sites

KDZ in 1 structure; the first of them:

  • 6RPN · Structure of metallo beta lactamase vim-2 with cyclic boronate APC308. · KDZ A301 · binds PHE62, TYR67, TRP87, HIS114, HIS116, ASP118, HIS179, CYS198 and 5 more

Residues it binds most

HIS 2, ASP 2, ALA 2, ASN 2, CYS 2, GLY 2, TRP 2, TYR 2, PHE 1 (residue and the binding sites it lines).

Found with

  • KL8 · (3~{S})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid
  • MG · Magnesium ion
  • ZN · Zinc ion
  • CL · Chloride ion
  • GOL · Glycerol

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