MolNFT v1 · #162771 · protein
Crystal structure of phosphorylated RAB8A in complex with the rab- binding domain of RILPL2
6RIR: “Crystal structure of phosphorylated RAB8A in complex with the rab- binding domain of RILPL2”. X-ray diffraction, 2 ligands (GTP, MG). MolNFT v1 #162771 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RIR
- Type
- protein
- Length
- 412 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P61006, Q969X0
- Ligands
- GTP, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 173 | — | P61006 |
| B | — | protein | 175 | — | P61006 |
| D | — | protein | 32 | — | Q969X0 |
| C | — | protein | 32 | — | Q969X0 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RIR · Crystal structure of phosphorylated Rab8a in complex with the Rab-binding domain of RILPL2 · the same entry in another collection · chain C against C, TM-score 1.00
- P61006 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-8A (P61006) · a predicted model of the same protein · chain B against A, TM-score 0.98
- Q969X0 · AlphaFold monomer V2.0 prediction for rilp-like protein 2 (Q969X0) · a predicted model of the same protein · chain C against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61006
- Every structure of UniProt Q969X0
- Elsewhere: RCSB PDB 6RIR · PDBe 6RIR · UniProt P61006 · UniProt Q969X0
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