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MolNFT v1 · #162746 · protein

Structure of a minimal photosystem I from a green alga

6RHZ: “Structure of a minimal photosystem I from a green alga”. Electron microscopy, 11 ligands (CLA, BCR, CHL). MolNFT v1 #162746 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6RHZ
Type
protein
Length
2,783 residues
Chains
11
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
C1K003, C1K004, D0FXV2, D0FXZ0, D0FXW7, D0FXW0
Ligands
CLA, BCR, CHL, LHG, LMG, LUT, XAT, SF4, PQN, CL0, DGD

Structure

electron microscopy · 11 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
1—protein197—C1K003
2—protein208——
3—protein210—C1K004
4—protein211——
A—protein739—D0FXV2
B—protein730—D0FXZ0
C—protein80—D0FXW7
D—protein141——
E—protein64——
F—protein163——
J—protein40—D0FXW0

Ligands and binding sites

  • CLA · Chlorophyll A · ligand · 134 copies · chains 1, 4, 2, 3, A, F, B, J
  • BCR · Beta-carotene · ligand · 23 copies · chains 1, 2, 3, 4, A, B, F, J
  • CHL · Chlorophyll B · ligand · 10 copies · chains 1, 4, 2, 3
  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 6 copies · chains 1, 4, 2, 3, A, B
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 5 copies · chains 2, 4, A, J, 3, B
  • LUT · (3R,3'R,6S)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol · ligand · 4 copies · chains 1, 2, 3, 4
  • XAT · (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-diepoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,3'-diol · ligand · 4 copies · chains 1, 2, 3, 4
  • SF4 · Iron/sulfur cluster · ligand · 3 copies · chains A, B, C
  • PQN · Phylloquinone · ligand · 2 copies · chains A, B
  • CL0 · Chlorophyll A isomer · ligand · chains A, B
  • DGD · Digalactosyl diacyl glycerol (dgdg) · ligand · chains B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6RHZ · Structure of a minimal photosystem I from a green alga · the same entry in another collection · chain 1 against 1, TM-score 1.00

Analyse

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