MolNFT v1 · #161787 · protein

Cryo-EM structure of calcium-bound MTMEM16F lipid scramblase in digitonin

6QP6: “Cryo-EM structure of calcium-bound MTMEM16F lipid scramblase in digitonin”. Electron microscopy, 2 ligands (P1O, CA). MolNFT v1 #161787 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6QP6
Type: protein
Length: 1,482 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q6P9J9
Ligands: P1O, CA

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	741	—	Q6P9J9

Ligands and binding sites

P1O · 1,2-didecanoyl-sn-glycero-3-phosphocholine · ligand · 2 copies · chains A, B
CA · Calcium ion · metal · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6QP6 · Cryo-EM structure of calcium-bound mTMEM16F lipid scramblase in digitonin · the same entry in another collection · chain A against A, TM-score 1.00
Q6P9J9 · AlphaFold monomer V2.0 prediction for anoctamin-6 (Q6P9J9) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6P9J9
Elsewhere: RCSB PDB 6QP6 · PDBe 6QP6 · UniProt Q6P9J9

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