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MolNFT v1 · #161635 · protein

Aplysia californica achbp in complex with 2-fluoro- (CARBAMOYLPYRIDINYL)DESCHLOROEPIBATIDINE analogue (1)

6QKK: “Aplysia californica achbp in complex with 2-fluoro- (CARBAMOYLPYRIDINYL)DESCHLOROEPIBATIDINE analogue (1)”. X-ray diffraction, 4 ligands (H92, OXL, NAG). MolNFT v1 #161635 on GenesisL1: 3D structure, binding sites and pockets in…

PDB
6QKK
Type
protein
Length
2,059 residues
Chains
10
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q8WSF8
Ligands
H92, OXL, NAG, PO4

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, E, F, I—protein205—Q8WSF8
B, D, G, H, J—protein206—Q8WSF8
C—protein209—Q8WSF8

Ligands and binding sites

  • H92 · 4-[5-[(1~{R},2~{R},4~{S})-7-azabicyclo[2.2.1]heptan-2-yl]-2-fluoranyl-pyridin-3-yl]benzamide · ligand · 10 copies · chains A, B, C, D, E, F, G, H, I, J
  • OXL · Oxalate ion · ligand · chains B
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, D, I, J
  • PO4 · Phosphate ion · ion · 10 copies · chains A, B, C, D, E, F, G, H, I, J
  • EDO · 1,2-ethanediol · additive · 40 copies · chains A, E, B, C, D, F, J, G, H, I

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6QKK · Aplysia californica AChBP in complex with 2-Fluoro-(carbamoylpyridinyl)deschloroepibatidin… · the same entry in another collection · chain I against I, TM-score 1.00

Analyse

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