MolNFT v1 · #161563 · protein + DNA
The crystal structure of POL2CORE in complex with DNA and an incoming nucleotide, carrying an fe-S cluster
6QIB: “The crystal structure of POL2CORE in complex with DNA and an incoming nucleotide, carrying an fe-S cluster”. X-ray diffraction, 3 ligands (SF4, DTP, CA). MolNFT v1 #161563 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6QIB
- Type
- protein + DNA
- Length
- 1,149 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P21951
- Ligands
- SF4, DTP, CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1123 | — | P21951 |
| P | — | dna | 11 | — | — |
| T | — | dna | 15 | — | — |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- DTP · 2'-deoxyadenosine 5'-triphosphate · ligand · chains A, P, T
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QIB · The crystal structure of Pol2CORE in complex with DNA and an incoming nucleotide… · the same entry in another collection · chain A against A, TM-score 1.00
- P21951 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon catalytic subunit a (P21951) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21951
- Elsewhere: RCSB PDB 6QIB · PDBe 6QIB · UniProt P21951
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