MolNFT v1 · #160717 · protein
Crystal structure of class D beta-lactamase oxa-48 with faropenem
6PSG: “Crystal structure of class D beta-lactamase oxa-48 with faropenem”. X-ray diffraction, 2 ligands (DGF, CL). MolNFT v1 #160717 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PSG
- Type
- protein
- Length
- 986 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A482LRD5
- Ligands
- DGF, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 247 | — | A0A482LRD5 |
| B | — | protein | 246 | — | A0A482LRD5 |
| C | — | protein | 249 | — | A0A482LRD5 |
| D | — | protein | 244 | — | A0A482LRD5 |
Ligands and binding sites
- DGF · (2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid · ligand · 4 copies · chains A, B, C, D
- CL · Chloride ion · ion · 2 copies · chains A, B, C, D
- GOL · Glycerol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PSG · Crystal Structure of Class D Beta-lactamase OXA-48 with Faropenem · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A482LRD5
- Elsewhere: RCSB PDB 6PSG · PDBe 6PSG · UniProt A0A482LRD5
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