MolNFT v1 · #159392 · protein
VPS4 with cyclic peptide bound in the central pore
6OO2: “VPS4 with cyclic peptide bound in the central pore”. Electron microscopy, 3 ligands (ADP, BEF, MG). MolNFT v1 #159392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OO2
- Type
- protein
- Length
- 2,443 residues
- Chains
- 19
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P52917, Q06263
- Ligands
- ADP, BEF, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 314 | — | P52917 |
| B | — | protein | 322 | — | P52917 |
| C, D | — | protein | 321 | — | P52917 |
| E | — | protein | 303 | — | P52917 |
| G | — | protein | 20 | — | — |
| F | — | protein | 304 | — | P52917 |
| H, J, L, N, P, R | — | protein | 41 | — | Q06263 |
| I, K, M, O, Q | — | protein | 50 | — | Q06263 |
| S | — | protein | 42 | — | Q06263 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains A, B, C, D, E
- BEF · Beryllium trifluoride ion · ligand · 3 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OO2 · Vps4 with Cyclic Peptide Bound in the Central Pore · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52917
- Every structure of UniProt Q06263
- Elsewhere: RCSB PDB 6OO2 · PDBe 6OO2 · UniProt P52917 · UniProt Q06263
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