MolNFT v1 · #159253 · protein

Dimeric structure of LRRK2 GTPase domain

6OJE: “Dimeric structure of LRRK2 GTPase domain”. X-ray diffraction, 2 ligands (GDP, MG). MolNFT v1 #159253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OJE
Type: protein
Length: 373 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q5S007
Ligands: GDP, MG

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	186	—	Q5S007
B	—	protein	187	—	Q5S007

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6OJE · Dimeric structure of LRRK2 GTPase domain · the same entry in another collection · chain A against A, TM-score 1.00
Q5S007 · AlphaFold monomer V2.0 prediction for leucine-rich repeat SERINE/THREONINE-protein kinase… · a predicted model of the same protein · chain A against A, TM-score 0.70

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5S007
Elsewhere: RCSB PDB 6OJE · PDBe 6OJE · UniProt Q5S007

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