MolNFT v1 · #159108 · protein + DNA
Cryo-EM structure of mouse RAG1/2 nfc complex (DNA1)
6OEO: “Cryo-EM structure of mouse RAG1/2 nfc complex (DNA1)”. Electron microscopy, 2 ligands (CA, ZN). MolNFT v1 #159108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OEO
- Type
- protein + DNA
- Length
- 2,176 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P15919, P21784, P09429
- Ligands
- CA, ZN
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 608 | — | P15919 |
| B, D | — | protein | 346 | — | P21784 |
| C | — | protein | 616 | — | P15919 |
| F | — | dna | 46 | — | — |
| I | — | dna | 46 | — | — |
| G | — | dna | 57 | — | — |
| J | — | dna | 57 | — | — |
| N | — | protein | 54 | — | P09429 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, I, C, J
- ZN · Zinc ion · metal · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OEO · Cryo-EM structure of mouse RAG1/2 NFC complex (DNA1) · the same entry in another collection · chain N against N, TM-score 1.00
- P21784 · AlphaFold monomer V2.0 prediction for V(D)J recombination-activating protein 2 (P21784) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P15919 · AlphaFold monomer V2.0 prediction for V(D)J recombination-activating protein 1 (P15919) · a predicted model of the same protein · chain C against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15919
- Every structure of UniProt P21784
- Every structure of UniProt P09429
- Elsewhere: RCSB PDB 6OEO · PDBe 6OEO · UniProt P15919 · UniProt P21784 · UniProt P09429
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