MolNFT v1 · #158815 · protein
The effect of modifier structure on the activation of leukotriene A4 hydrolase aminopeptidase activity.
6O5H · Leukotriene a-4 hydrolase: “The effect of modifier structure on the activation of leukotriene A4 hydrolase aminopeptidase activity.”. X-ray diffraction, 2 ligands (LNJ, ZN), 17 pockets (best druggability 0.86). MolNFT v1 #158815 on…
- PDB
- 6O5H
- Type
- protein
- Length
- 1,823 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Leukotriene a-4 hydrolase
- EC
- 3.3.2.6
- UniProt
- P09960
- Ligands
- LNJ, ZN
- Pockets
- 17 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leukotriene a-4 hydrolase (EC 3.3.2.6) | protein | 607 | 43% helix, 23% strand | P09960 |
| B, C | Leukotriene a-4 hydrolase (EC 3.3.2.6) | protein | 608 | 43% helix, 23% strand | P09960 |
Ligands and binding sites
- LNJ · 4-{4-[(4-methoxyphenyl)methyl]phenyl}-1,3-thiazol-2-amine · ligand · 3 copies · chains A, B, C
- ZN · Zinc ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
17 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 839 | 0.86 | 0.89 | 82 | LNJ, ZN |
| 2 | 1056 | 0.85 | 0.86 | 98 | LNJ |
| 3 | 1037 | 0.85 | 0.86 | 89 | LNJ |
| 4 | 535 | 0.78 | 0.85 | 82 | empty |
| 5 | 1126 | 0.74 | 0.77 | 89 | empty |
Interfaces
2 interfaces between chains.
- B–C · 633 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 451 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6O5H · The effect of modifier structure on the activation of leukotriene A4 hydrolase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09960
- Elsewhere: RCSB PDB 6O5H · PDBe 6O5H · UniProt P09960
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