MolNFT v1 · #158814 · protein
Calmodulin in complex with isomalbrancheamide D
6O5G · Calmodulin-1: “Calmodulin in complex with isomalbrancheamide D”. X-ray diffraction, 3 ligands (LMJ, CA, ZN), 1 pocket (best druggability 0.44). MolNFT v1 #158814 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6O5G
- Type
- protein
- Length
- 143 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calmodulin-1
- UniProt
- P0DP23
- Ligands
- LMJ, CA, ZN
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calmodulin-1 | protein | 143 | 59% helix, 4% strand | P0DP23 |
Ligands and binding sites
- LMJ · (5as,12as,13as)-9-bromo-8-chloro-12,12-dimethyl-2,3,11, 12,12A,13-hexahydro-1H,5H,6H-5A,13A-(epiminomethano) indolizino[7,6-b]carbazol-14-one · ligand · chains A
- CA · Calcium ion · metal · 4 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.44 | 0.81 | 10 | LMJ |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DP23
- Elsewhere: RCSB PDB 6O5G · PDBe 6O5G · UniProt P0DP23
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