MolNFT v1 · #15827 · protein
Mismatch repair in methylated DNA. structure of the mismatch-specific thymine glycosylase domain of methyl-cpg-binding protein MBD4
1NGN · Methyl-cpg binding protein MBD4: “Mismatch repair in methylated DNA. structure of the mismatch-specific thymine glycosylase domain of…”. X-ray diffraction, 1 pocket (best druggability 0.35). MolNFT v1 #15827 on GenesisL1: 3D…
- PDB
- 1NGN
- Type
- protein
- Length
- 144 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methyl-cpg binding protein MBD4
- UniProt
- Q9Z2D7
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methyl-cpg binding protein MBD4 | protein | 144 | 66% helix, 0% strand | Q9Z2D7 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.35 | 0.76 | 15 | empty |
Compared structures
- 1NGN · Mismatch repair in methylated DNA. Structure of the mismatch-specific thymine glycosylase… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Z2D7 · AlphaFold monomer V2.0 prediction for methyl-cpg-binding domain protein 4 (Q9Z2D7) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z2D7
- Elsewhere: RCSB PDB 1NGN · PDBe 1NGN · UniProt Q9Z2D7
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