MolNFT v1 · #158242 · protein
ADP bound to K46BE&K114BD mutant ATP-grasp fold of blastocystis hominis succinyl-CoA synthetase
6NO5: “ADP bound to K46BE&K114BD mutant ATP-grasp fold of blastocystis hominis succinyl-CoA synthetase”. X-ray diffraction, 3 ligands (ADP, MG, NH4). MolNFT v1 #158242 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NO5
- Type
- protein
- Length
- 927 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3FHP0
- Ligands
- ADP, MG, NH4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 239 | — | B3FHP0 |
| B | — | protein | 234 | — | B3FHP0 |
| C | — | protein | 221 | — | B3FHP0 |
| D | — | protein | 233 | — | B3FHP0 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- NH4 · Ammonium ion · ion · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NO5 · ADP bound to K46bE&K114bD mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA… · the same entry in another collection · chain D against D, TM-score 1.00
- B3FHP0 · AlphaFold monomer V2.0 prediction for succinate--CoA ligase [ADP- forming] subunit beta… · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3FHP0
- Elsewhere: RCSB PDB 6NO5 · PDBe 6NO5 · UniProt B3FHP0
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