MolNFT v1 · #157753 · protein
Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl- AMINO(DETHIA)-CoA
6N97: “Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl- AMINO(DETHIA)-CoA”. X-ray diffraction, 3 ligands (YZS, KGP, NI). MolNFT v1 #157753 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N97
- Type
- protein
- Length
- 1,560 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P52045
- Ligands
- YZS, KGP, NI
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 260 | — | P52045 |
Ligands and binding sites
- YZS · (2S)-sulfonatepropionyl-amino(dethia)-CoA · ligand · 9 copies · chains A, B, C, D, E, F
- KGP · (2R)-sulfonatepropionyl-amino(dethia)-CoA · ligand · 6 copies · chains A, B, C, D, E, F
- NI · Nickel (II) ion · metal · 2 copies · chains A, B, C, D, E, F
- IMD · Imidazole · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N97 · Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl-amino(dethia)-CoA · the same entry in another collection · chain C against C, TM-score 1.00
- P52045 · AlphaFold monomer V2.0 prediction for methylmalonyl-CoA decarboxylase (P52045) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52045
- Elsewhere: RCSB PDB 6N97 · PDBe 6N97 · UniProt P52045
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