MolNFT v1 · #157458 · protein
Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3 degree oscillation
6MZZ: “Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3 degree oscillation”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.43). MolNFT v1 #157458 on GenesisL1: 3D structure, binding…
- PDB
- 6MZZ
- Type
- protein
- Length
- 595 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluoroacetate dehalogenase
- EC
- 3.8.1.3
- UniProt
- Q6NAM1
- Ligands
- CA
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluoroacetate dehalogenase (EC 3.8.1.3) | protein | 297 | 47% helix, 16% strand | Q6NAM1 |
| B | Fluoroacetate dehalogenase (EC 3.8.1.3) | protein | 298 | 45% helix, 16% strand | Q6NAM1 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.43 | 0.76 | 26 | empty |
| 2 | 67 | 0.33 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1175 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6MZZ · Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6NAM1 · AlphaFold monomer V2.0 prediction for fluoroacetate dehalogenase (Q6NAM1) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NAM1
- Elsewhere: RCSB PDB 6MZZ · PDBe 6MZZ · UniProt Q6NAM1
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