MolNFT v1 · #15745 · protein
Crystal structure of sp-camp binding R1A subunit of camp- dependent protein kinase
1NE6 · Camp-dependent protein kinase type I-alpha regulatory chain: “Crystal structure of sp-camp binding R1A subunit of camp- dependent protein kinase”. X-ray diffraction, 1 ligand (SP1), 3 pockets (best druggability 0.64). MolNFT v1…
- PDB
- 1NE6
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Camp-dependent protein kinase type I-alpha regulatory chain
- UniProt
- P00514
- Ligands
- SP1
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Camp-dependent protein kinase type I-alpha regulatory chain | protein | 268 | 36% helix, 30% strand | P00514 |
Ligands and binding sites
- SP1 · 6-(6-amino-purin-9-yl)-2-thioxo-tetrahydro-2-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.64 | 0.84 | 27 | SP1 |
| 2 | 97 | 0.58 | 0.86 | 30 | empty |
| 3 | 160 | 0.58 | 0.82 | 28 | SP1 |
Compared structures
- 1NE6 · Crystal structure of Sp-cAMP binding R1a subunit of cAMP-dependent protein kinase · the same entry in another collection · chain A against A, TM-score 1.00
- P00514 · AlphaFold monomer V2.0 prediction for camp-dependent protein kinase type I-alpha… · a predicted model of the same protein · chain A against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00514
- Elsewhere: RCSB PDB 1NE6 · PDBe 1NE6 · UniProt P00514
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