MolNFT v1 · #157062 · protein
Crystal structure of lpqn involved in cell envelope biogenesis of mycobacterium tuberculosis
6MNA · Probable conserved lipoprotein lpqn: “Crystal structure of lpqn involved in cell envelope biogenesis of mycobacterium tuberculosis”. X-ray diffraction, 2 ligands (U2D, GLC), 3 pockets (best druggability 0.51). MolNFT v1 #157062 on…
- PDB
- 6MNA
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable conserved lipoprotein lpqn
- UniProt
- O53780
- Ligands
- U2D, GLC
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable conserved lipoprotein lpqn | protein | 173 | 20% helix, 43% strand | O53780 |
Ligands and binding sites
- U2D · 6-O-decanoyl-alpha-D-glucopyranose · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.51 | 0.81 | 20 | U2D |
| 2 | 63 | 0.48 | 0.84 | 19 | empty |
| 3 | 69 | 0.31 | 0.74 | 13 | empty |
Compared structures
- 6MNA · Crystal structure of LpqN involved in cell envelope biogenesis of Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
- O53780 · AlphaFold monomer V2.0 prediction for lipoprotein lpqn (O53780) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O53780
- Elsewhere: RCSB PDB 6MNA · PDBe 6MNA · UniProt O53780
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