Research workbench
Crystal structure of lpqn involved in cell envelope biogenesis of mycobacterium tuberculosis
Analyse Crystal structure of lpqn involved in cell envelope biogenesis of mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6MNA
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable conserved lipoprotein lpqn
- UniProt
- O53780
- Ligands
- U2D, GLC
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable conserved lipoprotein lpqn | protein | 173 | 20% helix, 43% strand | O53780 |
Ligands and binding sites
- U2D · 6-O-decanoyl-alpha-D-glucopyranose · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.51 | 0.81 | 20 | U2D |
| 2 | 63 | 0.48 | 0.84 | 19 | empty |
| 3 | 69 | 0.31 | 0.74 | 13 | empty |
Compared structures
- 6MNA · Crystal structure of LpqN involved in cell envelope biogenesis of Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
- O53780 · AlphaFold monomer V2.0 prediction for lipoprotein lpqn (O53780) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O53780
- Elsewhere: RCSB PDB 6MNA · PDBe 6MNA · UniProt O53780
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