MolNFT v1 · #15692 · protein

N-cadherin, two-domain fragment

1NCJ · Protein (N-cadherin): “N-cadherin, two-domain fragment”. X-ray diffraction, 2 ligands (CA, IUM). MolNFT v1 #15692 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1NCJ
Type: protein
Length: 214 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (N-cadherin)
UniProt: P15116
Ligands: CA, IUM

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (N-cadherin)	protein	214	3% helix, 39% strand	P15116

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A
IUM · Uranyl (VI) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

1NCJ · N-cadherin, two-domain fragment · the same entry in another collection · chain A against A, TM-score 1.00
P15116 · AlphaFold monomer V2.0 prediction for cadherin-2 (P15116) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15116
Elsewhere: RCSB PDB 1NCJ · PDBe 1NCJ · UniProt P15116

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