MolNFT v1 · #15659 · RNA

The structure of RNA aptamer for HIV tat complexed with two argininamide molecules

1NBK: “The structure of RNA aptamer for HIV tat complexed with two argininamide molecules”. Solution nmr, 1 ligand (GND), 1 pocket (best druggability 0.35). MolNFT v1 #15659 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1NBK
Type: RNA
Length: 34 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA aptamer
Ligands: GND
Pockets: 1 · best druggability 0.35

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA aptamer	rna	34	—	—

Ligands and binding sites

GND · 2-amino-5-guanidino-pentanoic acid · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.35	0.74	11	GND

Compared structures

1NBK · The structure of RNA aptamer for HIV Tat complexed with two argininamide molecules · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1NBK · PDBe 1NBK

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