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The structure of RNA aptamer for HIV tat complexed with two argininamide molecules

Analyse The structure of RNA aptamer for HIV tat complexed with two argininamide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1NBK
Type: RNA
Length: 34 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA aptamer
Ligands: GND
Pockets: 1 · best druggability 0.35

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA aptamer	rna	34	—	—

Ligands and binding sites

GND · 2-amino-5-guanidino-pentanoic acid · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.35	0.74	11	GND

Compared structures

1NBK · The structure of RNA aptamer for HIV Tat complexed with two argininamide molecules · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1NBK · PDBe 1NBK

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