MolNFT v1 · #156356 · protein
Crystal structure of rsmd methyltransferase of M. tuberculosis in complex with sinefungin reveals key interactions
6M1C · Possible methyltransferase (methylase): “Crystal structure of rsmd methyltransferase of M. tuberculosis in complex with sinefungin reveals key…”. X-ray diffraction, 1 ligand (SFG), 1 pocket (best druggability 0.61). MolNFT v1…
- PDB
- 6M1C
- Type
- protein
- Length
- 184 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Possible methyltransferase (methylase)
- UniProt
- I6XFS7
- Ligands
- SFG
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Possible methyltransferase (methylase) | protein | 184 | 30% helix, 23% strand | I6XFS7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 251 | 0.61 | 0.80 | 38 | SFG, ACT |
Compared structures
- 6M1C · Crystal structure of RsmD methyltransferase of M. tuberculosis in complex with sinefungin… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6XFS7
- Elsewhere: RCSB PDB 6M1C · PDBe 6M1C · UniProt I6XFS7
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