MolNFT v1 · #156336 · protein
2.7A yeast vo STATE3
6M0R: “2.7A yeast vo STATE3”. Electron microscopy, 6 ligands (PEE, PPV, EYR). MolNFT v1 #156336 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6M0R
- Type
- protein
- Length
- 2,915 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P32842, P23968, P53262, Q3E7B6, P25515, P0C5R9, P32366, P32563
- Ligands
- PEE, PPV, EYR, NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 158 | — | P32842 |
| C | — | protein | 198 | — | P23968 |
| N | — | protein | 52 | — | P53262 |
| M | — | protein | 71 | — | Q3E7B6 |
| E, F, G, H, I, J, K, L | — | protein | 159 | — | P25515 |
| O | — | protein | 69 | — | P0C5R9 |
| B | — | protein | 345 | — | P32366 |
| A | — | protein | 750 | — | P32563 |
Ligands and binding sites
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · 30 copies · chains C, N, D, E, F, G, H, M, A, O, I, J, K, L, B
- PPV · Pyrophosphate · ligand · chains A
- EYR · (6~{E},10~{E},14~{E},18~{E},22~{E},26~{E},30~{R})-2,6, 10,14,18,22,26,30-octamethyldotriaconta-2,6,10,14,18, 22,26-heptaene · ligand · chains C, A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains M, A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6M0R · 2.7A Yeast Vo state3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32842
- Every structure of UniProt P23968
- Every structure of UniProt P53262
- Every structure of UniProt Q3E7B6
- Every structure of UniProt P25515
- Every structure of UniProt P0C5R9
- Every structure of UniProt P32366
- Every structure of UniProt P32563
- Elsewhere: RCSB PDB 6M0R · PDBe 6M0R · UniProt P32842 · UniProt P23968 · UniProt P53262 · UniProt Q3E7B6 · UniProt P25515 · UniProt P0C5R9 · UniProt P32366 · UniProt P32563
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