MolNFT v1 · #155998 · protein
Crystal structure of human D-2-hydroxyglutarate dehydrogenase in complex with D-lactate (D-lac)
6LPT: “Crystal structure of human D-2-hydroxyglutarate dehydrogenase in complex with D-lactate (D-lac)”. X-ray diffraction, 3 ligands (FAD, LAC, ZN). MolNFT v1 #155998 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LPT
- Type
- protein
- Length
- 933 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8N465
- Ligands
- FAD, LAC, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 466 | — | Q8N465 |
| B | — | protein | 467 | — | Q8N465 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- LAC · Lactic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LPT · Crystal structure of human D-2-hydroxyglutarate dehydrogenase in complex with D-lactate… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N465 · AlphaFold monomer V2.0 prediction for D-2-hydroxyglutarate dehydrogenase, mitochondrial… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N465
- Elsewhere: RCSB PDB 6LPT · PDBe 6LPT · UniProt Q8N465
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