MolNFT v1 · #154240 · protein
Crystal structure of sidj-cam-AMP ternary complex at 3.11 a
6K4R: “Crystal structure of sidj-cam-AMP ternary complex at 3.11 a”. X-ray diffraction, 3 ligands (AMP, CA, CL). MolNFT v1 #154240 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K4R
- Type
- protein
- Length
- 1,667 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5ZTK6, P0DP23
- Ligands
- AMP, CA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 731 | — | Q5ZTK6 |
| B | — | protein | 738 | — | Q5ZTK6 |
| C | — | protein | 116 | — | P0DP23 |
| D | — | protein | 82 | — | P0DP23 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains C, D
- CL · Chloride ion · ion · 4 copies · chains A, B
- PG4 · Tetraethylene glycol · additive · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K4R · Crystal structure of SidJ-CaM-AMP ternary complex at 3.11 A · the same entry in another collection · chain D against D, TM-score 1.00
- Q5ZTK6 · AlphaFold monomer V2.0 prediction for calmodulin-dependent glutamylase sidj (Q5ZTK6) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P0DP23 · AlphaFold monomer V2.0 prediction for calmodulin-1 (P0DP23) · a predicted model of the same protein · chain D against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZTK6
- Every structure of UniProt P0DP23
- Elsewhere: RCSB PDB 6K4R · PDBe 6K4R · UniProt Q5ZTK6 · UniProt P0DP23
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