MolNFT v1 · #154153 · protein + DNA
The complex of iswi-nucleosome in the ADP.BEF-bound state
6K1P: “The complex of iswi-nucleosome in the ADP.BEF-bound state”. Electron microscopy, 3 ligands (BEF, ADP, MG). MolNFT v1 #154153 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K1P
- Type
- protein + DNA
- Length
- 1,522 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A310TTQ1, P62799, Q6AZJ8, P02281, P38144
- Ligands
- BEF, ADP, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 98 | — | A0A310TTQ1 |
| B | — | protein | 88 | — | P62799 |
| C, G | — | protein | 107 | — | Q6AZJ8 |
| D, H | — | protein | 93 | — | P02281 |
| E | — | protein | 95 | — | A0A310TTQ1 |
| F | — | protein | 86 | — | P62799 |
| I | — | dna | 146 | — | — |
| J | — | dna | 146 | — | — |
| K | — | protein | 463 | — | P38144 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · chains K
- ADP · Adenosine-5'-diphosphate · ligand · chains K
- MG · Magnesium ion · metal · chains K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K1P · The complex of ISWI-nucleosome in the ADP.BeF-bound state · the same entry in another collection · chain K against K, TM-score 1.00
- P38144 · AlphaFold monomer V2.0 prediction for iswi chromatin-remodeling complex ATPase ISW1… · a predicted model of the same protein · chain K against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A310TTQ1
- Every structure of UniProt P62799
- Every structure of UniProt Q6AZJ8
- Every structure of UniProt P02281
- Every structure of UniProt P38144
- Elsewhere: RCSB PDB 6K1P · PDBe 6K1P · UniProt A0A310TTQ1 · UniProt P62799 · UniProt Q6AZJ8 · UniProt P02281 · UniProt P38144
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