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MolNFT v1 · #153246 · protein + RNA

Human mitochondrial oligoribonuclease in complex with RNA

6J7Z: “Human mitochondrial oligoribonuclease in complex with RNA”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #153246 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6J7Z
Type
protein + RNA
Length
323 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9Y3B8
Ligands
MG

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein144—Q9Y3B8
B—protein177—Q9Y3B8
C—rna2——

Ligands and binding sites

  • MG · Magnesium ion · metal · 2 copies · chains B, C
  • CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6J7Z · Human mitochondrial Oligoribonuclease in complex with RNA · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9Y3B8 · AlphaFold monomer V2.0 prediction for oligoribonuclease, mitochondrial (Q9Y3B8) · a predicted model of the same protein · chain B against A, TM-score 0.99

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