MolNFT v1 · #151372 · protein
Structure in P212121 form of the pbp agtb in complex with agropinic acid from A.TUMEFACIEN R10
6HLY · Agropine permease: “Structure in P212121 form of the pbp agtb in complex with agropinic acid from A.TUMEFACIEN R10”. X-ray diffraction, 1 ligand (G9Z), 2 pockets (best druggability 0.71). MolNFT v1 #151372 on GenesisL1: 3D…
- PDB
- 6HLY
- Type
- protein
- Length
- 320 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Agropine permease
- UniProt
- W8FRA6
- Ligands
- G9Z
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Agropine permease | protein | 320 | 47% helix, 19% strand | W8FRA6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 295 | 0.71 | 0.85 | 36 | EDO, G9Z |
| 2 | 82 | 0.35 | 0.75 | 26 | empty |
Compared structures
- 6HLY · Structure in P212121 form of the PBP AgtB in complex with agropinic acid from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8FRA6
- Elsewhere: RCSB PDB 6HLY · PDBe 6HLY · UniProt W8FRA6
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