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Ligand · G9Z

G9Z · agropinic acid

G9Z, agropinic acid (C11 H17 N O8, 291.3 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
G9Z
Formula
C11 H17 N O8
Class
ligand
Structures
8
PDB entries
4

Binding sites

G9Z in 8 structures; the first of them:

  • 6HLX · Structure of the PBP AgaA in complex with agropinic acid from A.tumefacien R10 · G9Z A604 · binds GLN43, GLY45, THR46, TYR239, GLN267, TYR355, PHE357, GLN358 and 12 more
  • 6HLY · Structure in P212121 form of the PBP AgtB in complex with agropinic acid from… · G9Z A410 · binds TYR37, PHE41, GLU89, MET128, PHE130, THR132, PRO162, SER163 and 9 more
  • 6HLZ · Structure in C2 form of the PBP AgtB from A.tumefacien R10 in complex with agropinic acid · G9Z A432 · binds TYR37, PHE41, GLU89, MET128, PHE130, THR132, PRO162, SER163 and 9 more
  • 6HM2 · Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10 · G9Z A401 · binds TYR37, PHE41, GLU89, MET128, PHE130, THR132, PRO162, SER163 and 9 more
  • 6HLX · Structure of the pbp agaa in complex with agropinic acid from A.TUMEFACIEN R10 · G9Z A604 · binds GLN43, GLY45, THR46, TYR239, GLN267, TYR355, PHE357, GLN358 and 12 more
  • 6HLY · Structure in P212121 form of the pbp agtb in complex with agropinic acid from… · G9Z A410 · binds TYR37, PHE41, GLU89, MET128, PHE130, THR132, PRO162, SER163 and 9 more
  • 6HLZ · Structure in C2 form of the pbp agtb from A.TUMEFACIEN R10 in complex with agropinic acid · G9Z A432 · binds TYR37, PHE41, GLU89, MET128, PHE130, THR132, PRO162, SER163 and 9 more
  • 6HM2 · Structure in P1 form of the pbp agtb in complex with agropinic acid from A.TUMEFACIEN R10 · G9Z A401 · binds TYR37, PHE41, GLU89, MET128, PHE130, THR132, PRO162, SER163 and 9 more

Residues it binds most

TYR 18, PHE 18, THR 18, GLU 18, GLY 18, ARG 18, MET 18, SER 18, ALA 16, ASP 16 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether
  • P4G · 1-ethoxy-2-(2-ethoxyethoxy)ethane
  • NA · Sodium ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion
  • GOL · Glycerol
  • MES · 2-(N-morpholino)-ethanesulfonic acid
  • P6G · Hexaethylene glycol

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